63
247
0
http://purl.obolibrary.org/obo/SO_0002187
HERV_insertion
'HERV_insertion' SubClassOf 'derives_from' some http://purl.obolibrary.org/obo/SO_0002268
http://purl.obolibrary.org/obo/SO_0001203
RNA_polymerase_promoter
'RNA_polymerase_promoter' SubClassOf 'promoter'
http://purl.obolibrary.org/obo/SO_0001204
Phage_RNA_Polymerase_Promoter
'Phage_RNA_Polymerase_Promoter' SubClassOf 'RNA_polymerase_promoter'
'Phage_RNA_Polymerase_Promoter' SubClassOf http://purl.obolibrary.org/obo/SO_0002311
http://purl.obolibrary.org/obo/SO_0001679
transcription_regulatory_region
'transcription_regulatory_region' SubClassOf 'regulatory_region'
http://purl.obolibrary.org/obo/SO_0000344
splice_enhancer
'splice_enhancer' SubClassOf 'enhancer'
http://purl.obolibrary.org/obo/SO_0001660
core_promoter_element
'core_promoter_element' SubClassOf 'promoter_element'
'core_promoter_element' SubClassOf 'part_of' some http://purl.obolibrary.org/obo/SO_0002221
'core_promoter_element' SubClassOf http://purl.obolibrary.org/obo/SO_0002309
http://purl.obolibrary.org/obo/SO_0001240
TSS_region
'TSS_region' SubClassOf 'has_part' some 'TSS'
'TSS_region' SubClassOf 'gene_component_region'
http://purl.obolibrary.org/obo/SO_0000370
small_regulatory_ncRNA
'small_regulatory_ncRNA' SubClassOf 'ncRNA'
'small_regulatory_ncRNA' SubClassOf http://purl.obolibrary.org/obo/SO_0002247
http://purl.obolibrary.org/obo/SO_0001720
epigenetically_modified_region
'epigenetically_modified_region' SubClassOf 'biological_region'
'epigenetically_modified_region' SubClassOf 'regulatory_region'
http://purl.obolibrary.org/obo/SO_0001715
ISRE
'ISRE' SubClassOf 'transcriptional_cis_regulatory_region'
'ISRE' SubClassOf 'TF_binding_site'
http://purl.obolibrary.org/obo/SO_0001773
lethal_variant
'lethal_variant' SubClassOf 'functional_variant'
'lethal_variant' SubClassOf http://purl.obolibrary.org/obo/SO_0002218
http://purl.obolibrary.org/obo/SO_0000419
mature_protein_region
'mature_protein_region' SubClassOf 'derives_from' some http://purl.obolibrary.org/obo/SO_0002249
http://purl.obolibrary.org/obo/SO_0000418
signal_peptide
'signal_peptide' SubClassOf 'derives_from' some http://purl.obolibrary.org/obo/SO_0002251
http://purl.obolibrary.org/obo/SO_0002191
imprinting_control_region
'imprinting_control_region' SubClassOf 'regulatory_region'
'imprinting_control_region' SubClassOf 'epigenetically_modified_region'
http://purl.obolibrary.org/obo/SO_0000057
operator
'operator' SubClassOf 'gene_group_regulatory_region'
'operator' SubClassOf 'transcriptional_cis_regulatory_region'
http://purl.obolibrary.org/obo/SO_0001786
loss_of_heterozygosity
'loss_of_heterozygosity' SubClassOf 'functional_variant'
'loss_of_heterozygosity' SubClassOf http://purl.obolibrary.org/obo/SO_0002218
http://purl.obolibrary.org/obo/SO_0002205
response_element
'response_element' SubClassOf 'transcription_regulatory_region'
'response_element' SubClassOf 'transcriptional_cis_regulatory_region'
http://purl.obolibrary.org/obo/SO_0001840
GATA_box
'GATA_box' SubClassOf 'core_promoter_element'
'GATA_box' SubClassOf 'TF_binding_site'
http://purl.obolibrary.org/obo/SO_0000551
polyA_signal_sequence
'polyA_signal_sequence' SubClassOf 'transcription_regulatory_region'
'polyA_signal_sequence' SubClassOf 'transcriptional_cis_regulatory_region'
http://purl.obolibrary.org/obo/SO_0001055
transcriptional_cis_regulatory_region
'transcriptional_cis_regulatory_region' SubClassOf 'transcription_regulatory_region'
'transcriptional_cis_regulatory_region' SubClassOf 'regulatory_region'
http://purl.obolibrary.org/obo/SO_0001056
splicing_regulatory_region
'splicing_regulatory_region' SubClassOf 'transcription_regulatory_region'
'splicing_regulatory_region' SubClassOf 'transcriptional_cis_regulatory_region'
http://purl.obolibrary.org/obo/SO_0000176
minus_35_signal
'minus_35_signal' SubClassOf 'DNA_motif'
'minus_35_signal' SubClassOf http://purl.obolibrary.org/obo/SO_0002312
http://purl.obolibrary.org/obo/SO_0000175
minus_10_signal
'minus_10_signal' SubClassOf 'DNA_motif'
'minus_10_signal' SubClassOf http://purl.obolibrary.org/obo/SO_0002312
http://purl.obolibrary.org/obo/SO_0000171
RNApol_III_promoter
'RNApol_III_promoter' SubClassOf 'RNA_polymerase_promoter'
'RNApol_III_promoter' SubClassOf http://purl.obolibrary.org/obo/SO_0002221
http://purl.obolibrary.org/obo/SO_0000170
RNApol_II_promoter
'RNApol_II_promoter' SubClassOf 'RNA_polymerase_promoter'
'RNApol_II_promoter' SubClassOf http://purl.obolibrary.org/obo/SO_0002221
http://purl.obolibrary.org/obo/SO_0001062
propeptide
'propeptide' SubClassOf 'derives_from' some http://purl.obolibrary.org/obo/SO_0002250
http://purl.obolibrary.org/obo/SO_0001427
cis_regulatory_frameshift_element
'cis_regulatory_frameshift_element' SubClassOf 'transcription_regulatory_region'
'cis_regulatory_frameshift_element' SubClassOf 'transcriptional_cis_regulatory_region'
http://purl.obolibrary.org/obo/SO_0001492
intronic_regulatory_region
'intronic_regulatory_region' SubClassOf 'transcription_regulatory_region'
'intronic_regulatory_region' SubClassOf 'transcriptional_cis_regulatory_region'
http://purl.obolibrary.org/obo/SO_0000169
RNApol_I_promoter
'RNApol_I_promoter' SubClassOf 'RNA_polymerase_promoter'
'RNApol_I_promoter' SubClassOf http://purl.obolibrary.org/obo/SO_0002221
http://purl.obolibrary.org/obo/SO_0000167
promoter
'promoter' SubClassOf 'gene_component_region'
http://purl.obolibrary.org/obo/SO_0000141
terminator
'terminator' SubClassOf 'transcription_regulatory_region'
'terminator' SubClassOf 'transcriptional_cis_regulatory_region'
http://purl.obolibrary.org/obo/SO_0000627
insulator
'insulator' SubClassOf 'transcriptional_cis_regulatory_region'
'insulator' SubClassOf 'CRM'
http://purl.obolibrary.org/obo/SO_0000614
bacterial_terminator
'bacterial_terminator' SubClassOf 'gene_group_regulatory_region'
http://purl.obolibrary.org/obo/SO_0000613
bacterial_RNApol_promoter
'bacterial_RNApol_promoter' SubClassOf 'RNA_polymerase_promoter'
'bacterial_RNApol_promoter' SubClassOf 'gene_group_regulatory_region'
'bacterial_RNApol_promoter' SubClassOf http://purl.obolibrary.org/obo/SO_0002222
http://purl.obolibrary.org/obo/SO_0001535
p_element
'p_element' SubClassOf 'DNA_transposon'
'p_element' SubClassOf 'terminal_inverted_repeat_element'
http://purl.obolibrary.org/obo/SO_0001538
transcript_function_variant
'transcript_function_variant' SubClassOf 'functional_variant'
'transcript_function_variant' SubClassOf http://purl.obolibrary.org/obo/SO_0002218
http://purl.obolibrary.org/obo/SO_0001539
translational_product_function_variant
'translational_product_function_variant' SubClassOf 'functional_variant'
'translational_product_function_variant' SubClassOf http://purl.obolibrary.org/obo/SO_0002218
http://purl.obolibrary.org/obo/SO_0000673
transcript
'transcript' SubClassOf 'overlaps' some http://purl.obolibrary.org/obo/SO_0002300
http://purl.obolibrary.org/obo/SO_1001284
regulon
'regulon' SubClassOf 'has_part' some http://purl.obolibrary.org/obo/SO_0002300
http://purl.obolibrary.org/obo/SO_0001900
M26_binding_site
'M26_binding_site' SubClassOf 'DNA_motif'
http://purl.obolibrary.org/obo/SO_0000297
D_loop
'D_loop' SubClassOf 'origin_of_replication'
'D_loop' SubClassOf 'biological_region'
http://purl.obolibrary.org/obo/SO_0002064
LINE1_insertion
'LINE1_insertion' SubClassOf 'derives_from' some http://purl.obolibrary.org/obo/SO_0002272
http://purl.obolibrary.org/obo/SO_0002067
HERV_deletion
'HERV_deletion' SubClassOf 'derives_from' some http://purl.obolibrary.org/obo/SO_0002268
http://purl.obolibrary.org/obo/SO_0002069
LINE1_deletion
'LINE1_deletion' SubClassOf 'derives_from' some http://purl.obolibrary.org/obo/SO_0002272
http://purl.obolibrary.org/obo/SO_0002052
dominant_negative_variant
'dominant_negative_variant' SubClassOf 'functional_variant'
'dominant_negative_variant' SubClassOf http://purl.obolibrary.org/obo/SO_0002218
http://purl.obolibrary.org/obo/SO_0002053
gain_of_function_variant
'gain_of_function_variant' SubClassOf 'functional_variant'
'gain_of_function_variant' SubClassOf http://purl.obolibrary.org/obo/SO_0002218
http://purl.obolibrary.org/obo/SO_0002054
loss_of_function_variant
'loss_of_function_variant' SubClassOf 'functional_variant'
'loss_of_function_variant' SubClassOf http://purl.obolibrary.org/obo/SO_0002218
http://purl.obolibrary.org/obo/SO_0002055
null_mutation
'null_mutation' SubClassOf 'functional_variant'
'null_mutation' SubClassOf http://purl.obolibrary.org/obo/SO_0002218
http://purl.obolibrary.org/obo/SO_0002047
transcription_pause_site
'transcription_pause_site' SubClassOf 'transcription_regulatory_region'
'transcription_pause_site' SubClassOf 'transcriptional_cis_regulatory_region'
http://purl.obolibrary.org/obo/SO_0000235
TF_binding_site
'TF_binding_site' SubClassOf 'transcription_regulatory_region'
'TF_binding_site' SubClassOf 'part_of' some 'CRM'
'TF_binding_site' SubClassOf 'transcriptional_cis_regulatory_region'
http://purl.obolibrary.org/obo/SO_0000275
snoRNA
'snoRNA' SubClassOf 'ncRNA'
'snoRNA' SubClassOf http://purl.obolibrary.org/obo/SO_0002247
http://purl.obolibrary.org/obo/SO_0000274
snRNA
'snRNA' SubClassOf 'ncRNA'
'snRNA' SubClassOf http://purl.obolibrary.org/obo/SO_0002247
http://purl.obolibrary.org/obo/SO_0000253
tRNA
'tRNA' SubClassOf 'ncRNA'
'tRNA' SubClassOf http://purl.obolibrary.org/obo/SO_0002247
http://purl.obolibrary.org/obo/SO_0001610
elongated_polypeptide_C_terminal
'elongated_polypeptide_C_terminal' SubClassOf 'derives_from' some http://purl.obolibrary.org/obo/SO_0002229
http://purl.obolibrary.org/obo/SO_0001611
elongated_polypeptide_N_terminal
'elongated_polypeptide_N_terminal' SubClassOf 'derives_from' some http://purl.obolibrary.org/obo/SO_0002228
http://purl.obolibrary.org/obo/SO_0000752
gene_group_regulatory_region
'gene_group_regulatory_region' SubClassOf 'member_of' some 'gene_group'
'gene_group_regulatory_region' SubClassOf 'transcription_regulatory_region'
http://purl.obolibrary.org/obo/SO_0000738
nuclear_sequence
'nuclear_sequence' SubClassOf 'organelle_sequence'
'nuclear_sequence' SubClassOf 'sequence_location'
http://purl.obolibrary.org/obo/SO_0001653
retinoic_acid_responsive_element
'retinoic_acid_responsive_element' SubClassOf 'DNA_motif'
'retinoic_acid_responsive_element' SubClassOf 'part_of' some 'promoter'
'retinoic_acid_responsive_element' SubClassOf 'TF_binding_site'
http://purl.obolibrary.org/obo/SO_0001659
promoter_element
'promoter_element' SubClassOf 'part_of' some 'promoter'
http://purl.obolibrary.org/obo/SO_0000322
nuclease_hypersensitive_site
'nuclease_hypersensitive_site' SubClassOf http://purl.obolibrary.org/obo/SO_0002331
http://purl.obolibrary.org/obo/SO_0000315
TSS
'TSS' SubClassOf http://purl.obolibrary.org/obo/SO_0002309
http://purl.obolibrary.org/obo/SO_0000727
CRM
'CRM' SubClassOf 'has_part' some 'TF_binding_site'
'CRM' EquivalentTo 'transcriptional_cis_regulatory_region' and ('has_part' some 'TF_binding_site')
http://purl.obolibrary.org/obo/SO_0000725
transit_peptide
'transit_peptide' SubClassOf 'derives_from' some http://purl.obolibrary.org/obo/SO_0002252
http://purl.obolibrary.org/obo/BS_00129
http://purl.obolibrary.org/obo/BS_00128
http://purl.obolibrary.org/obo/BS_00125
http://purl.obolibrary.org/obo/BS_00124
http://purl.obolibrary.org/obo/SO_0001270
http://purl.obolibrary.org/obo/BS_0000340
http://purl.obolibrary.org/obo/BS_0000341
http://purl.obolibrary.org/obo/BS_0000338
http://purl.obolibrary.org/obo/BS_0000339
http://purl.obolibrary.org/obo/SO_0000358
http://purl.obolibrary.org/obo/SO_0001242
http://purl.obolibrary.org/obo/SO_1000177
http://purl.obolibrary.org/obo/SO_1000179
http://purl.obolibrary.org/obo/BS_00068
http://purl.obolibrary.org/obo/BS_00067
http://purl.obolibrary.org/obo/BS_00069
http://purl.obolibrary.org/obo/BS_00063
http://purl.obolibrary.org/obo/BS_00071
http://purl.obolibrary.org/obo/BS_00070
http://purl.obolibrary.org/obo/BS_00073
http://purl.obolibrary.org/obo/BS_00072
http://purl.obolibrary.org/obo/BS_00052
http://purl.obolibrary.org/obo/BS_00055
http://purl.obolibrary.org/obo/BS_00077
http://purl.obolibrary.org/obo/BS_00076
http://purl.obolibrary.org/obo/BS_00028
http://purl.obolibrary.org/obo/BS_00027
http://purl.obolibrary.org/obo/BS_00029
http://purl.obolibrary.org/obo/BS_00026
http://purl.obolibrary.org/obo/BS_00012
http://purl.obolibrary.org/obo/BS_00042
http://purl.obolibrary.org/obo/BS_00041
http://purl.obolibrary.org/obo/SO_0000827
http://purl.obolibrary.org/obo/SO_0000826
http://purl.obolibrary.org/obo/BS_00036
http://purl.obolibrary.org/obo/BS_00033
http://purl.obolibrary.org/obo/BS_00032
http://purl.obolibrary.org/obo/BS_00040
http://purl.obolibrary.org/obo/SO_0002268
Endogenous_Retrovirus_LTR_retrotransposon
'Endogenous_Retrovirus_LTR_retrotransposon' SubClassOf 'LTR_retrotransposon'
http://purl.obolibrary.org/obo/BS_00229
http://purl.obolibrary.org/obo/SO_0002269
R2_LINE_retrotransposon
'R2_LINE_retrotransposon' SubClassOf 'LINE_element'
http://purl.obolibrary.org/obo/BS_00226
http://purl.obolibrary.org/obo/BS_00225
http://purl.obolibrary.org/obo/BS_00228
http://purl.obolibrary.org/obo/BS_00227
http://purl.obolibrary.org/obo/BS_00222
http://purl.obolibrary.org/obo/BS_00221
http://purl.obolibrary.org/obo/BS_00224
http://purl.obolibrary.org/obo/BS_00223
http://purl.obolibrary.org/obo/BS_00220
http://purl.obolibrary.org/obo/SO_0002260
LARD
'LARD' SubClassOf 'LTR_retrotransposon'
http://purl.obolibrary.org/obo/SO_0002261
TRIM
'TRIM' SubClassOf 'LTR_retrotransposon'
http://purl.obolibrary.org/obo/SO_0002262
Watson_strand
'Watson_strand' SubClassOf 'chromosome_part'
http://purl.obolibrary.org/obo/SO_0002263
Crick_strand
'Crick_strand' SubClassOf 'chromosome_part'
http://purl.obolibrary.org/obo/SO_0002264
Copia_LTR_retrotransposon
'Copia_LTR_retrotransposon' SubClassOf 'LTR_retrotransposon'
http://purl.obolibrary.org/obo/SO_0002265
Gypsy_LTR_retrotransposon
'Gypsy_LTR_retrotransposon' SubClassOf 'LTR_retrotransposon'
http://purl.obolibrary.org/obo/SO_0002266
Bel_Pao_LTR_retrotransposon
'Bel_Pao_LTR_retrotransposon' SubClassOf 'LTR_retrotransposon'
http://purl.obolibrary.org/obo/SO_0002267
Retrovirus_LTR_retrotransposon
'Retrovirus_LTR_retrotransposon' SubClassOf 'LTR_retrotransposon'
http://purl.obolibrary.org/obo/BS_00219
http://purl.obolibrary.org/obo/SO_0002257
knob
'knob' SubClassOf 'repeat_region'
http://purl.obolibrary.org/obo/SO_0002258
teb1_recognition_motif
'teb1_recognition_motif' SubClassOf 'DNA_motif'
http://purl.obolibrary.org/obo/SO_0002259
polyA_site_cluster
'polyA_site_cluster' SubClassOf 'biological_region'
'polyA_site_cluster' SubClassOf 'part_of' some 'three_prime_UTR'
'polyA_site_cluster' SubClassOf 'has_part' some 'polyA_site'
http://purl.obolibrary.org/obo/BS_00215
http://purl.obolibrary.org/obo/BS_00214
http://purl.obolibrary.org/obo/BS_00216
http://purl.obolibrary.org/obo/BS_00211
http://purl.obolibrary.org/obo/BS_00210
http://purl.obolibrary.org/obo/BS_00213
http://purl.obolibrary.org/obo/BS_00212
http://purl.obolibrary.org/obo/SO_0002250
propeptide_region_of_CDS
'propeptide_region_of_CDS' SubClassOf 'CDS_region'
http://purl.obolibrary.org/obo/SO_0002251
signal_peptide_region_of_CDS
'signal_peptide_region_of_CDS' SubClassOf 'CDS_region'
http://purl.obolibrary.org/obo/SO_0002252
transit_peptide_region_of_CDS
'transit_peptide_region_of_CDS' SubClassOf 'CDS_region'
http://purl.obolibrary.org/obo/SO_0002253
stem_loop_region
'stem_loop_region' SubClassOf 'part_of' some 'stem_loop'
'stem_loop_region' SubClassOf 'RNA_sequence_secondary_structure'
http://purl.obolibrary.org/obo/SO_0002254
loop
'loop' SubClassOf 'stem_loop_region'
http://purl.obolibrary.org/obo/SO_0002255
stem
'stem' SubClassOf 'stem_loop_region'
http://purl.obolibrary.org/obo/SO_0002256
non_complimentary_stem
'non_complimentary_stem' SubClassOf 'stem'
http://purl.obolibrary.org/obo/SO_0002246
three_prime_duplicated_transcript
'three_prime_duplicated_transcript' SubClassOf 'partially_duplicated_transcript'
http://purl.obolibrary.org/obo/SO_0002247
sncRNA
'sncRNA' SubClassOf 'ncRNA'
http://purl.obolibrary.org/obo/SO_0002248
spurious_protein
'spurious_protein' SubClassOf 'experimental_feature'
http://purl.obolibrary.org/obo/SO_0002249
mature_protein_region_of_CDS
'mature_protein_region_of_CDS' SubClassOf 'CDS_region'
http://purl.obolibrary.org/obo/BS_00246
http://purl.obolibrary.org/obo/SO_0002240
rRNA_5_8S_gene
'rRNA_5_8S_gene' SubClassOf 'derives_from' some 'rRNA_5_8S'
'rRNA_5_8S_gene' SubClassOf 'rRNA_gene'
http://purl.obolibrary.org/obo/SO_0002241
rRNA_21S_gene
'rRNA_21S_gene' SubClassOf 'derives_from' some 'rRNA_21S'
'rRNA_21S_gene' SubClassOf 'rRNA_gene'
http://purl.obolibrary.org/obo/SO_0002242
rRNA_25S_gene
'rRNA_25S_gene' SubClassOf 'derives_from' some 'rRNA_25S'
'rRNA_25S_gene' SubClassOf 'rRNA_gene'
http://purl.obolibrary.org/obo/SO_0002243
rRNA_23S_gene
'rRNA_23S_gene' SubClassOf 'derives_from' some 'rRNA_23S'
'rRNA_23S_gene' SubClassOf 'rRNA_gene'
http://purl.obolibrary.org/obo/SO_0002244
partially_duplicated_transcript
'partially_duplicated_transcript' SubClassOf 'transcript_variant'
http://purl.obolibrary.org/obo/SO_0002245
five_prime_duplicated_transcript
'five_prime_duplicated_transcript' SubClassOf 'partially_duplicated_transcript'
http://purl.obolibrary.org/obo/SO_0002235
SUMO_interaction_motif
'SUMO_interaction_motif' SubClassOf 'protein_protein_contact'
http://purl.obolibrary.org/obo/SO_0002236
rRNA_18S_gene
'rRNA_18S_gene' SubClassOf 'rRNA_gene'
'rRNA_18S_gene' SubClassOf 'derives_from' some 'rRNA_18S'
http://purl.obolibrary.org/obo/SO_0002237
rRNA_16S_gene
'rRNA_16S_gene' SubClassOf 'rRNA_gene'
'rRNA_16S_gene' SubClassOf 'derives_from' some 'rRNA_16S'
http://purl.obolibrary.org/obo/SO_0002238
rRNA_5S_gene
'rRNA_5S_gene' SubClassOf 'rRNA_gene'
'rRNA_5S_gene' SubClassOf 'derives_from' some 'rRNA_5S'
http://purl.obolibrary.org/obo/SO_0002239
rRNA_28S_gene
'rRNA_28S_gene' SubClassOf 'derives_from' some 'rRNA_28S'
'rRNA_28S_gene' SubClassOf 'rRNA_gene'
http://purl.obolibrary.org/obo/BS_00233
http://purl.obolibrary.org/obo/BS_00232
http://purl.obolibrary.org/obo/BS_00235
http://purl.obolibrary.org/obo/BS_00234
http://purl.obolibrary.org/obo/BS_00231
http://purl.obolibrary.org/obo/BS_00230
http://purl.obolibrary.org/obo/SO_0002230
CAAX_box
'CAAX_box' SubClassOf 'polypeptide_conserved_motif'
http://purl.obolibrary.org/obo/SO_0002231
self_cleaving_ribozyme
'self_cleaving_ribozyme' SubClassOf 'has_quality' some 'ribonuclease_site'
'self_cleaving_ribozyme' EquivalentTo 'ribozyme' and ('has_quality' some 'ribonuclease_site')
'self_cleaving_ribozyme' SubClassOf 'ribozyme'
http://purl.obolibrary.org/obo/SO_0002232
selection_marker
'selection_marker' SubClassOf 'genetic_marker'
http://purl.obolibrary.org/obo/SO_0002233
homologous_chromosome_recognition_and_pairing_locus
'homologous_chromosome_recognition_and_pairing_locus' SubClassOf 'binding_site'
'homologous_chromosome_recognition_and_pairing_locus' SubClassOf 'member_of' some 'chromosome_part'
http://purl.obolibrary.org/obo/SO_0002234
pumilio_response_element
'pumilio_response_element' SubClassOf 'UTR_region'
'pumilio_response_element' SubClassOf 'part_of' some 'three_prime_UTR'
http://purl.obolibrary.org/obo/SO_0002290
Penelope_retrotransposon
'Penelope_retrotransposon' SubClassOf 'non_LTR_retrotransposon'
http://purl.obolibrary.org/obo/SO_0002291
circular_ncRNA
'circular_ncRNA' SubClassOf 'ncRNA'
http://purl.obolibrary.org/obo/SO_0002292
circular_mRNA
'circular_mRNA' SubClassOf 'mRNA'
http://purl.obolibrary.org/obo/SO_0002293
mitochondrial_control_region
'mitochondrial_control_region' SubClassOf 'has_origin' some 'mitochondrial_sequence'
'mitochondrial_control_region' SubClassOf 'origin_of_replication'
http://purl.obolibrary.org/obo/SO_0002294
mitochondrial_D_loop
'mitochondrial_D_loop' SubClassOf 'mitochondrial_control_region'
'mitochondrial_D_loop' SubClassOf 'D_loop'
http://purl.obolibrary.org/obo/SO_0002295
transcription_factor_regulatory_site
'transcription_factor_regulatory_site' SubClassOf 'TF_binding_site'
http://purl.obolibrary.org/obo/SO_0002296
TFRS_module
'TFRS_module' SubClassOf 'transcriptional_cis_regulatory_region'
'TFRS_module' SubClassOf 'has_part' some 'transcription_factor_regulatory_site'
http://purl.obolibrary.org/obo/SO_0002297
TFRS_collection
'TFRS_collection' SubClassOf 'transcriptional_cis_regulatory_region'
'TFRS_collection' SubClassOf 'has_part' some 'transcription_factor_regulatory_site'
http://purl.obolibrary.org/obo/SO_0002298
simple_operon
'simple_operon' SubClassOf 'operon'
http://purl.obolibrary.org/obo/SO_0002299
complex_operon
'complex_operon' SubClassOf 'operon'
http://purl.obolibrary.org/obo/BS_00208
http://purl.obolibrary.org/obo/BS_00207
http://purl.obolibrary.org/obo/BS_00209
http://purl.obolibrary.org/obo/BS_00204
http://purl.obolibrary.org/obo/BS_00203
http://purl.obolibrary.org/obo/BS_00206
http://purl.obolibrary.org/obo/BS_00205
http://purl.obolibrary.org/obo/BS_00202
http://purl.obolibrary.org/obo/SO_0002280
Mutator_TIR_transposon
'Mutator_TIR_transposon' SubClassOf 'terminal_inverted_repeat_element'
http://purl.obolibrary.org/obo/SO_0002281
Merlin_TIR_transposon
'Merlin_TIR_transposon' SubClassOf 'terminal_inverted_repeat_element'
http://purl.obolibrary.org/obo/SO_0002282
Transib_TIR_transposon
'Transib_TIR_transposon' SubClassOf 'terminal_inverted_repeat_element'
http://purl.obolibrary.org/obo/SO_0002283
piggyBac_TIR_transposon
'piggyBac_TIR_transposon' SubClassOf 'terminal_inverted_repeat_element'
http://purl.obolibrary.org/obo/SO_0002284
PIF_Harbinger_TIR_transposon
'PIF_Harbinger_TIR_transposon' SubClassOf 'terminal_inverted_repeat_element'
http://purl.obolibrary.org/obo/SO_0002285
CACTA_TIR_transposon
'CACTA_TIR_transposon' SubClassOf 'terminal_inverted_repeat_element'
http://purl.obolibrary.org/obo/SO_0002286
YR_retrotransposon
'YR_retrotransposon' SubClassOf 'non_LTR_retrotransposon'
http://purl.obolibrary.org/obo/SO_0002287
DIRS_YR_retrotransposon
'DIRS_YR_retrotransposon' SubClassOf 'YR_retrotransposon'
http://purl.obolibrary.org/obo/SO_0002288
Ngaro_YR_retrotransposon
'Ngaro_YR_retrotransposon' SubClassOf 'YR_retrotransposon'
http://purl.obolibrary.org/obo/SO_0002289
Viper_YR_retrotransposon
'Viper_YR_retrotransposon' SubClassOf 'YR_retrotransposon'
http://purl.obolibrary.org/obo/SO_0002279
hAT_TIR_transposon
'hAT_TIR_transposon' SubClassOf 'terminal_inverted_repeat_element'
http://purl.obolibrary.org/obo/SO_0002270
RTE_LINE_retrotransposon
'RTE_LINE_retrotransposon' SubClassOf 'LINE_element'
http://purl.obolibrary.org/obo/SO_0002271
Jockey_LINE_retrotransposon
'Jockey_LINE_retrotransposon' SubClassOf 'LINE_element'
http://purl.obolibrary.org/obo/SO_0002272
L1_LINE_retrotransposon
'L1_LINE_retrotransposon' SubClassOf 'LINE_element'
http://purl.obolibrary.org/obo/SO_0002273
I_LINE_retrotransposon
'I_LINE_retrotransposon' SubClassOf 'LINE_element'
http://purl.obolibrary.org/obo/SO_0002274
tRNA_SINE_retrotransposon
'tRNA_SINE_retrotransposon' SubClassOf 'SINE_element'
http://purl.obolibrary.org/obo/SO_0002275
7SL_SINE_retrotransposon
'7SL_SINE_retrotransposon' SubClassOf 'SINE_element'
http://purl.obolibrary.org/obo/SO_0002276
5S_SINE_retrotransposon
'5S_SINE_retrotransposon' SubClassOf 'SINE_element'
http://purl.obolibrary.org/obo/SO_0002277
Crypton_YR_transposon
'Crypton_YR_transposon' SubClassOf 'DNA_transposon'
http://purl.obolibrary.org/obo/SO_0002278
Tc1_Mariner_TIR_transposon
'Tc1_Mariner_TIR_transposon' SubClassOf 'terminal_inverted_repeat_element'
http://purl.obolibrary.org/obo/SO_0001783
http://purl.obolibrary.org/obo/SO_0002224
2A_self_cleaving_peptide_region
'2A_self_cleaving_peptide_region' SubClassOf 'polypeptide_region'
http://purl.obolibrary.org/obo/SO_0002225
LOZ1_response_element
'LOZ1_response_element' SubClassOf 'zinc_repressed_element'
http://purl.obolibrary.org/obo/SO_0002226
group_IIC_intron
'group_IIC_intron' SubClassOf 'group_II_intron'
http://purl.obolibrary.org/obo/SO_0002227
CDS_extension
'CDS_extension' SubClassOf 'CDS'
http://purl.obolibrary.org/obo/SO_0002228
CDS_five_prime_extension
'CDS_five_prime_extension' SubClassOf 'CDS_extension'
http://purl.obolibrary.org/obo/SO_0002229
CDS_three_prime_extension
'CDS_three_prime_extension' SubClassOf 'CDS_extension'
http://purl.obolibrary.org/obo/SO_0002220
function_uncertain_variant
'function_uncertain_variant' SubClassOf 'functional_effect_variant'
http://purl.obolibrary.org/obo/SO_0002221
eukaryotic_promoter
'eukaryotic_promoter' SubClassOf 'promoter'
http://purl.obolibrary.org/obo/SO_0002222
prokaryotic_promoter
'prokaryotic_promoter' SubClassOf 'promoter'
http://purl.obolibrary.org/obo/SO_0002223
inert_DNA_spacer
'inert_DNA_spacer' SubClassOf 'regulatory_region'
http://purl.obolibrary.org/obo/SO_0002217
unspecified_indel
'unspecified_indel' SubClassOf 'sequence_alteration'
http://purl.obolibrary.org/obo/SO_0002218
functionally_abnormal
'functionally_abnormal' SubClassOf 'functional_effect_variant'
http://purl.obolibrary.org/obo/SO_0002219
functionally_normal
'functionally_normal' SubClassOf 'functional_effect_variant'
http://purl.obolibrary.org/obo/SO_1000146
http://purl.obolibrary.org/obo/SO_1000114
http://purl.obolibrary.org/obo/SO_1000113
http://purl.obolibrary.org/obo/SO_0000019
http://purl.obolibrary.org/obo/SO_1000034
http://purl.obolibrary.org/obo/SO_1000033
http://purl.obolibrary.org/obo/SO_0000974
http://purl.obolibrary.org/obo/SO_1000091
http://purl.obolibrary.org/obo/SO_1000090
http://purl.obolibrary.org/obo/BS_00185
http://purl.obolibrary.org/obo/BS_00187
http://purl.obolibrary.org/obo/BS_00186
http://purl.obolibrary.org/obo/BS_00178
http://purl.obolibrary.org/obo/BS_00181
http://purl.obolibrary.org/obo/BS_00182
http://purl.obolibrary.org/obo/BS_00149
http://purl.obolibrary.org/obo/BS_00148
http://purl.obolibrary.org/obo/BS_00145
http://purl.obolibrary.org/obo/BS_00144
http://purl.obolibrary.org/obo/BS_00147
http://purl.obolibrary.org/obo/BS_00146
http://purl.obolibrary.org/obo/BS_00141
http://purl.obolibrary.org/obo/BS_00140
http://purl.obolibrary.org/obo/BS_00143
http://purl.obolibrary.org/obo/BS_00142
http://purl.obolibrary.org/obo/BS_00137
http://purl.obolibrary.org/obo/BS_00134
http://purl.obolibrary.org/obo/BS_00136
http://purl.obolibrary.org/obo/BS_00131
http://purl.obolibrary.org/obo/BS_00159
http://purl.obolibrary.org/obo/BS_00156
http://purl.obolibrary.org/obo/BS_00155
http://purl.obolibrary.org/obo/BS_00158
http://purl.obolibrary.org/obo/BS_00157
http://purl.obolibrary.org/obo/BS_00152
http://purl.obolibrary.org/obo/BS_00151
http://purl.obolibrary.org/obo/BS_00154
http://purl.obolibrary.org/obo/BS_00153
http://purl.obolibrary.org/obo/BS_00336
http://purl.obolibrary.org/obo/BS_00337
http://purl.obolibrary.org/obo/BS_00331
http://purl.obolibrary.org/obo/SO_0001069
http://purl.obolibrary.org/obo/SO_0001065
http://purl.obolibrary.org/obo/SO_0002301
transcription_unit
'transcription_unit' SubClassOf 'unit_of_gene_expression'
http://purl.obolibrary.org/obo/SO_0002302
simple_regulon
'simple_regulon' SubClassOf 'regulon'
http://purl.obolibrary.org/obo/SO_0002303
complex_regulon
'complex_regulon' SubClassOf 'regulon'
http://purl.obolibrary.org/obo/SO_0002304
topologically_associated_domain
'topologically_associated_domain' SubClassOf 'topologically_defined_region'
http://purl.obolibrary.org/obo/SO_0002305
topologically_associated_domain_boundary
'topologically_associated_domain_boundary' SubClassOf 'part_of' some 'topologically_associated_domain'
'topologically_associated_domain_boundary' SubClassOf 'junction'
http://purl.obolibrary.org/obo/SO_0002306
chromatin_regulatory_region
'chromatin_regulatory_region' SubClassOf 'chromosome_part'
http://purl.obolibrary.org/obo/SO_0002307
DNA_loop
'DNA_loop' SubClassOf 'chromosome_part'
'DNA_loop' SubClassOf 'overlaps' some 'topologically_associated_domain'
http://purl.obolibrary.org/obo/SO_0002308
DNA_loop_anchor
'DNA_loop_anchor' SubClassOf 'part_of' some 'DNA_loop'
'DNA_loop_anchor' SubClassOf 'cis_regulatory_module'
http://purl.obolibrary.org/obo/SO_0002309
core_promoter_element
'core_promoter_element' SubClassOf 'promoter_element'
'core_promoter_element' SubClassOf 'part_of' some 'promoter'
http://purl.obolibrary.org/obo/SO_0002300
unit_of_gene_expression
'unit_of_gene_expression' SubClassOf 'biological_region'
http://purl.obolibrary.org/obo/SO_0001430
http://purl.obolibrary.org/obo/SO_0002330
minus_2_translational_frameshift
'minus_2_translational_frameshift' SubClassOf 'translational_frameshift'
http://purl.obolibrary.org/obo/SO_0002331
accessible_DNA_region
'accessible_DNA_region' SubClassOf 'overlaps' some 'epigenetically_modified_region'
'accessible_DNA_region' SubClassOf 'biological_region'
http://purl.obolibrary.org/obo/SO_0002332
epigenomically_modified_region
'epigenomically_modified_region' SubClassOf 'has_quality' some 'epigenetically_modified'
'epigenomically_modified_region' SubClassOf 'epigenetically_modified_region'
http://purl.obolibrary.org/obo/SO_0002323
frameshift_variant_NMD_triggering
'frameshift_variant_NMD_triggering' SubClassOf 'frameshift_variant'
'frameshift_variant_NMD_triggering' SubClassOf 'NMD_triggering_variant'
http://purl.obolibrary.org/obo/SO_0002324
frameshift_variant_NMD_escaping
'frameshift_variant_NMD_escaping' SubClassOf 'NMD_escaping_variant'
'frameshift_variant_NMD_escaping' SubClassOf 'frameshift_variant'
http://purl.obolibrary.org/obo/SO_0002325
splice_donor_variant_NMD_triggering
'splice_donor_variant_NMD_triggering' SubClassOf 'splice_donor_variant'
'splice_donor_variant_NMD_triggering' SubClassOf 'NMD_triggering_variant'
http://purl.obolibrary.org/obo/SO_0002326
splice_donor_variant_NMD_escaping
'splice_donor_variant_NMD_escaping' SubClassOf 'NMD_escaping_variant'
'splice_donor_variant_NMD_escaping' SubClassOf 'splice_donor_variant'
http://purl.obolibrary.org/obo/SO_0002327
splice_acceptor_variant_NMD_triggering
'splice_acceptor_variant_NMD_triggering' SubClassOf 'NMD_triggering_variant'
'splice_acceptor_variant_NMD_triggering' SubClassOf 'splice_acceptor_variant'
http://purl.obolibrary.org/obo/SO_0002328
splice_acceptor_variant_NMD_escaping
'splice_acceptor_variant_NMD_escaping' SubClassOf 'NMD_escaping_variant'
'splice_acceptor_variant_NMD_escaping' SubClassOf 'splice_acceptor_variant'
http://purl.obolibrary.org/obo/SO_0002329
minus_1_translational_frameshift
'minus_1_translational_frameshift' SubClassOf 'translational_frameshift'
http://purl.obolibrary.org/obo/SO_0005839
http://purl.obolibrary.org/obo/SO_0002320
NMD_escaping_variant
'NMD_escaping_variant' SubClassOf 'functionally_abnormal'
http://purl.obolibrary.org/obo/SO_0002321
stop_gained_NMD_triggering
'stop_gained_NMD_triggering' SubClassOf 'stop_gained'
'stop_gained_NMD_triggering' SubClassOf 'NMD_triggering_variant'
http://purl.obolibrary.org/obo/SO_0002322
stop_gained_NMD_escaping
'stop_gained_NMD_escaping' SubClassOf 'stop_gained'
'stop_gained_NMD_escaping' SubClassOf 'NMD_escaping_variant'
http://purl.obolibrary.org/obo/SO_0002312
core_prokaryotic_promoter_element
'core_prokaryotic_promoter_element' SubClassOf 'core_promoter_element'
'core_prokaryotic_promoter_element' SubClassOf 'part_of' some 'prokaryotic_promoter'
http://purl.obolibrary.org/obo/SO_0002313
core_viral_promoter_element
'core_viral_promoter_element' SubClassOf 'part_of' some 'viral_promoter'
'core_viral_promoter_element' SubClassOf 'core_promoter_element'
http://purl.obolibrary.org/obo/SO_0002314
altered_gene_product_level
'altered_gene_product_level' SubClassOf 'functional_effect_variant'
http://purl.obolibrary.org/obo/SO_0002315
increased_gene_product_level
'increased_gene_product_level' SubClassOf 'altered_gene_product_level'
http://purl.obolibrary.org/obo/SO_1000007
http://purl.obolibrary.org/obo/SO_0002316
decreased_gene_product_level
'decreased_gene_product_level' SubClassOf 'altered_gene_product_level'
http://purl.obolibrary.org/obo/SO_0002317
absent_gene_product
'absent_gene_product' SubClassOf 'null_mutation'
'absent_gene_product' SubClassOf 'decreased_gene_product_level'
http://purl.obolibrary.org/obo/SO_0002318
altered_gene_product_structure
'altered_gene_product_structure' SubClassOf 'functional_effect_variant'
http://purl.obolibrary.org/obo/SO_1000004
http://purl.obolibrary.org/obo/SO_0002319
NMD_triggering_variant
'NMD_triggering_variant' SubClassOf 'functionally_abnormal'
http://purl.obolibrary.org/obo/SO_0002310
cryptic_promoter
'cryptic_promoter' SubClassOf 'part_of' some 'cryptic_gene'
'cryptic_promoter' SubClassOf 'promoter'
http://purl.obolibrary.org/obo/SO_0002311
viral_promoter
'viral_promoter' SubClassOf 'promoter'
http://purl.obolibrary.org/obo/SO_0000649
http://purl.obolibrary.org/obo/SO_0000648
http://purl.obolibrary.org/obo/SO_0001903
http://purl.obolibrary.org/obo/BS_00003
http://purl.obolibrary.org/obo/SO_0002000
http://purl.obolibrary.org/obo/SO_0001588
http://purl.obolibrary.org/obo/SO_0001581
http://purl.obolibrary.org/obo/SO_0001584
http://purl.obolibrary.org/obo/SO_0001652
http://purl.obolibrary.org/obo/SO_0001651
http://purl.obolibrary.org/obo/SO_0100042
http://purl.obolibrary.org/obo/SO_0001625